AT4G24730.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.627 What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : Calcineurin-like metallo-phosphoesterase superfamily protein | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: nitrate transmembrane transporters (TAIR:AT5G50200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr4:-:12749879..12753631 | ||||||||
| Molecular Weight (calculated) | 49516.90 Da | ||||||||
| IEP (calculated) | 6.98 | ||||||||
| GRAVY (calculated) | -0.28 | ||||||||
| Length | 443 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSAARQPLF SFGVIADVQY ADISDGRSFL GVPRYYRNSI LVLQRAVETW NQHGNLKFVI NMGDIVDGFC PKDQSLAATK KLVHEFEKFN GPVYHMIGNH 101: CLYNLPREEL LPLLKIPGRD GNAYYDFSPT PEYRVVVLDG YDISAVGWPQ EHPNTIAALK ILEEKNPNTD KNSPAGLEDV ARRFVKYNGG VGEKQLQWLD 201: SVLQDASNSN QRVIVCGHVP MSPGVASKAA LLWNFDEVMN IIHKYDSVKV CLSGHDHKGG YFVDSHGVHH RSLEAALECP PVLEAGKDMV TITWKLKSSS 301: AKVDTDTAFK TIQVKLCYAP ISQVDRPWRK TDNKLFKDRS CPHEIVSKAY DKTPQSLDWT IGLDIPTGTY FVRAYGIDGD GHEVAYGQST DEGRTTNLFS 401: VHAISGHHVG LDIASTFFSV FSVVSLFVFF VMEKRKAKLE QRE |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)