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AT4G27690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30865669 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar protein sorting 26B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vacuolar protein sorting 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26A (TAIR:AT5G53530.1); Has 795 Blast hits to 794 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 406; Fungi - 146; Plants - 106; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Protein Annotations
BioGrid:14170DNASU:828883eggNOG:ENOG410XSI1eggNOG:KOG3063
EMBL:AL035602EMBL:AL161571EMBL:AY094409EMBL:AY122891
EMBL:CP002687EnsemblPlants:AT4G27690EnsemblPlants:AT4G27690.1entrez:828883
ExpressionAtlas:Q9T091GeneID:828883Genevisible:Q9T091GO:GO:0005794
GO:GO:0008565GO:GO:0030904GO:GO:0031902GO:GO:0042147
hmmpanther:PTHR12233hmmpanther:PTHR12233:SF6HOGENOM:HOG000191799InParanoid:Q9T091
IntAct:Q9T091InterPro:IPR014756InterPro:IPR028934MINT:MINT-8066110
OMA:ETFPFEFPaxDb:Q9T091Pfam:PF03643Pfam:Q9T091
PhylomeDB:Q9T091PIR:A85322PIR:T05874PRIDE:Q9T091
PRO:PR:Q9T091ProteinModelPortal:Q9T091Proteomes:UP000006548RefSeq:NP_194499.2
SMR:Q9T091STRING:3702.AT4G27690.1SUPFAM:SSF81296TAIR:AT4G27690
tair10-symbols:VPS26BUniGene:At.24242UniGene:At.32074UniProt:Q9T091
Coordinates (TAIR10) chr4:+:13824019..13826235
Molecular Weight (calculated) 35206.40 Da
IEP (calculated) 7.57
GRAVY (calculated) -0.42
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MNYLLGAFKP ACNISITFSD GKNRKQVPMK KENGQTALVP LFHSQDTISG KVCIEPYQGK KVEHNGVKVE LLGQIEMYFD RGNFYDFTSL VRELDVPGEI
101: YERKTYPFEF PTVEMPYETY NGVNVRLRYV LKVTVTRGYA GSILEYQELV VRNYAPLPDI NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV ILGKIYFLLV
201: RIKMKNMDLE IRRRESTGAG ANTHVETETL AKFELMDGTP VRGESIPVRL FLAPYDLTPT HRNINNKFSV KYYLNLVLVD EEDRRYFKQQ EITLYRLKED
301: ASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)