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AT3G18430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.524
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin 9 (TAIR:AT3G51920.1); Has 4647 Blast hits to 4647 proteins in 476 species: Archae - 0; Bacteria - 13; Metazoa - 2571; Fungi - 385; Plants - 959; Viruses - 0; Other Eukaryotes - 719 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0034EMBL:AB026658EMBL:AY063789
EMBL:AY091287EMBL:CP002686EnsemblPlants:AT3G18430EnsemblPlants:AT3G18430.1
EnsemblPlants:AT3G18430.2entrez:821372Gene3D:1.10.238.10GeneID:821372
GO:GO:0005509GO:GO:0005773Gramene:AT3G18430.1Gramene:AT3G18430.2
hmmpanther:PTHR23056hmmpanther:PTHR23056:SF52InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247KEGG:ath:AT3G18430KO:K06268OMA:SFMSDEQ
Pfam:PF13499Pfscan:PS50222PhylomeDB:Q9LS47PRO:PR:Q9LS47
PROSITE:PS00018PROSITE:PS50222Proteomes:UP000006548RefSeq:NP_001189924.1
RefSeq:NP_566610.1scanprosite:PS00018SMR:Q9LS47STRING:3702.AT3G18430.1
SUPFAM:SSF47473TAIR:AT3G18430UniGene:At.27163UniProt:Q9LS47
Coordinates (TAIR10) chr3:+:6326180..6327476
Molecular Weight (calculated) 20032.80 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.20
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNTSSMLTQ YDIEEVQSHC HDLFEQQEIL SLYQRFCQLD RNAKGFISAD EFLSVPEFAM NPLSQRLLKM VDGLNFKDFV AFLSAFSAKA SLRQKVQLIF
101: KVYDSDCNGK VSFKDIMEVL RDLSGSFMSD EQREQVLSQV LKESGYTSDS FLTLEDFIKI FGSSRPEMDV EIPVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)