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AT5G09920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA polymerase II, Rpb4, core protein
Curator
Summary (TAIR10)
Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4)
Computational
Description (TAIR10)
NRPB4; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT4G15950.1); Has 441 Blast hits to 441 proteins in 181 species: Archae - 4; Bacteria - 0; Metazoa - 144; Fungi - 150; Plants - 95; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
BioGrid:16131eggNOG:COG5250eggNOG:KOG2351EMBL:AB016893
EMBL:AF016511EMBL:AK317113EMBL:AY086086EMBL:BT025500
EMBL:CP002688EnsemblPlants:AT5G09920EnsemblPlants:AT5G09920.1entrez:830853
GeneID:830853Genevisible:O48890GO:GO:0000166GO:GO:0000288
GO:GO:0000932GO:GO:0003899GO:GO:0005665GO:GO:0006366
GO:GO:0006367GO:GO:0031369GO:GO:0031990GO:GO:0034402
GO:GO:0045948Gramene:AT5G09920.1hmmpanther:PTHR21297HOGENOM:HOG000195281
InParanoid:O48890InterPro:IPR005574InterPro:IPR006590InterPro:IPR010997
KEGG:ath:AT5G09920KO:K03012OMA:GRAHDDEPaxDb:O48890
Pfam:O48890Pfam:PF03874PhylomeDB:O48890PRIDE:O48890
PRO:PR:O48890ProteinModelPortal:O48890Proteomes:UP000006548Reactome:R-ATH-112382
Reactome:R-ATH-113418Reactome:R-ATH-674695Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-72163Reactome:R-ATH-72165
Reactome:R-ATH-72203Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953
Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_196554.1SMART:SM00657
SMR:O48890STRING:3702.AT5G09920.1SUPFAM:SSF47819TAIR:AT5G09920
tair10-symbols:ATRPB15.9tair10-symbols:NRPB4tair10-symbols:RPB15.9tair10-symbols:RPB15.9.9
UniGene:At.6949UniProt:O48890
Coordinates (TAIR10) chr5:+:3096276..3097370
Molecular Weight (calculated) 15933.10 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.46
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGEEEENAA ELKIGDEFLK AKCLMNCEVS LILEHKFEQL QQISEDPMNQ VSQVFEKSLQ YVKRFSRYKN PDAVRQVREI LSRHQLTEFE LCVLGNLCPE
101: TVEEAVAMVP SLKTKGRAHD DEAIEKMLND LSLVKRFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)