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AT5G50870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 27
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 27 (UBC27); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.4); Has 10156 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4517; Fungi - 2174; Plants - 1846; Viruses - 24; Other Eukaryotes - 1593 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G50870-MONOMERBioCyc:ARA:GQT-2083-MONOMERBioGrid:20405EC:2.3.2.23
EMBL:AB017063EMBL:AY065303EMBL:AY096429EMBL:CP002688
EMBL:DQ027040EMBL:DQ677667EMBL:Z25704EnsemblPlants:AT5G50870
EnsemblPlants:AT5G50870.1entrez:835159ExpressionAtlas:Q9FI61Gene3D:3.10.110.10
GeneID:835159Genevisible:Q9FI61GO:GO:0005524GO:GO:0016567
GO:GO:0016740hmmpanther:PTHR24067hmmpanther:PTHR24067:SF29HOGENOM:HOG000233455
InParanoid:Q9FI61IntAct:Q9FI61InterPro:IPR000608InterPro:IPR009060
InterPro:IPR015940InterPro:IPR016135InterPro:IPR023313Pfam:PF00179
Pfam:PF00627Pfam:Q9FI61Pfscan:PS50030Pfscan:PS50127
PhylomeDB:Q9FI61PRIDE:Q9FI61PRO:PR:Q9FI61PROSITE:PS00183
PROSITE:PS50030PROSITE:PS50127ProteinModelPortal:Q9FI61Proteomes:UP000006548
RefSeq:NP_199900.1scanprosite:PS00183SMART:SM00165SMR:Q9FI61
SUPFAM:SSF46934SUPFAM:SSF54495TAIR:AT5G50870tair10-symbols:UBC27
UniGene:At.6957UniPathway:UPA00143UniProt:Q9FI61
Coordinates (TAIR10) chr5:-:20699626..20700998
Molecular Weight (calculated) 21255.20 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.39
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MIDFSRIQKE LQDCERNQDS SGIRVCPKSD NLTRLTGTIP GPIGTPYEGG TFQIDITMPD GYPFEPPKMQ FSTKVWHPNI SSQSGAICLD ILKDQWSPAL
101: TLKTALVSIQ ALLSAPEPKD PQDAVVAEQY MKNYQVFVST ARYWTETFAK KSSLEEKVKR LVEMGFGDAQ VRSAIESSGG DENLALEKLC SA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)