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AT1G15860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.798
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF298)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 784 Blast hits to 784 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 124; Plants - 115; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTIJeggNOG:KOG3077EMBL:BT009700EMBL:CP002684
EnsemblPlants:AT1G15860EnsemblPlants:AT1G15860.1EnsemblPlants:AT1G15860.2entrez:838156
ExpressionAtlas:Q7XJ64GeneID:838156Gramene:AT1G15860.1Gramene:AT1G15860.2
hmmpanther:PTHR12281hmmpanther:PTHR12281:SF12HOGENOM:HOG000241761InterPro:IPR005176
InterPro:IPR011992InterPro:IPR014764KEGG:ath:AT1G15860KO:K17824
PANTHER:PTHR12281Pfam:PF03556Pfscan:PS51229PhylomeDB:Q7XJ64
PROSITE:PS51229Proteomes:UP000006548RefSeq:NP_001154344.1RefSeq:NP_563983.4
SMR:Q7XJ64STRING:3702.AT1G15860.3SUPFAM:SSF47473TAIR:AT1G15860
UniGene:At.41911UniProt:Q7XJ64
Coordinates (TAIR10) chr1:+:5455055..5456741
Molecular Weight (calculated) 26641.70 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.55
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRSSSKKKS GQSTESVTTD LFRSASSKAS NKEMDRIDHL FNQYANKSSS LIDPEGIEEL CSNLEVSHTD IRILMLAWKM KAEKQGYFTH EEWRRGLKAL
101: RADTINKLKK ALPELEKEVR RPSNFADFYA YAFCYCLTEE KQKSIDIETI CQLLEIVMGS TFRAQVDYFV EYLKIQNDYK VINMDQWMGL YRFCNEISFP
201: DMGDYNPELA WPLILDNFVE WIQEKQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)