AT1G15860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.798 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Domain of unknown function (DUF298) | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 784 Blast hits to 784 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 124; Plants - 115; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:5455055..5456741 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 26641.70 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.46 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||
Length | 227 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRRSSSKKKS GQSTESVTTD LFRSASSKAS NKEMDRIDHL FNQYANKSSS LIDPEGIEEL CSNLEVSHTD IRILMLAWKM KAEKQGYFTH EEWRRGLKAL 101: RADTINKLKK ALPELEKEVR RPSNFADFYA YAFCYCLTEE KQKSIDIETI CQLLEIVMGS TFRAQVDYFV EYLKIQNDYK VINMDQWMGL YRFCNEISFP 201: DMGDYNPELA WPLILDNFVE WIQEKQA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)