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AT4G21160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent ARF-type GTPase activating protein family
Curator
Summary (TAIR10)
ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational
Description (TAIR10)
ZAC; FUNCTIONS IN: phospholipid binding, ARF GTPase activator activity; INVOLVED IN: intracellular protein transport; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 13 (TAIR:AT4G05330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13155eggNOG:COG5347eggNOG:KOG0703eggNOG:KOG1030
EMBL:AF177381EMBL:AK229406EMBL:AL021960EMBL:AL161554
EMBL:AY062549EMBL:AY088434EMBL:BT008822EMBL:CP002687
EnsemblPlants:AT4G21160EnsemblPlants:AT4G21160.1EnsemblPlants:AT4G21160.2EnsemblPlants:AT4G21160.3
EnsemblPlants:AT4G21160.4entrez:827864Gene3D:2.60.40.150GeneID:827864
Genevisible:Q9FVJ3GO:GO:0005096GO:GO:0005543GO:GO:0005773
GO:GO:0005794GO:GO:0005886GO:GO:0006886GO:GO:0043547
GO:GO:0046872Gramene:AT4G21160.1Gramene:AT4G21160.2Gramene:AT4G21160.3
Gramene:AT4G21160.4hmmpanther:PTHR23180hmmpanther:PTHR23180:SF245HOGENOM:HOG000238659
InParanoid:Q9FVJ3IntAct:Q9FVJ3InterPro:IPR000008InterPro:IPR001164
iPTMnet:Q9FVJ3KEGG:ath:AT4G21160KO:K12486OMA:SEGMVEF
PaxDb:Q9FVJ3Pfam:PF00168Pfam:PF01412Pfam:Q9FVJ3
Pfscan:PS50004Pfscan:PS50115PhylomeDB:Q9FVJ3PIR:T04947
PRIDE:Q9FVJ3PRINTS:PR00405PRO:PR:Q9FVJ3PROSITE:PS50004
PROSITE:PS50115ProteinModelPortal:Q9FVJ3Proteomes:UP000006548RefSeq:NP_567620.1
RefSeq:NP_849416.1RefSeq:NP_974581.1RefSeq:NP_974582.1SMART:SM00105
SMART:SM00239SMR:Q9FVJ3STRING:3702.AT4G21160.1SUPFAM:SSF49562
SUPFAM:SSF57863TAIR:AT4G21160tair10-symbols:AGD12tair10-symbols:ZAC
UniGene:At.75195UniProt:Q9FVJ3
Coordinates (TAIR10) chr4:+:11284694..11286532
Molecular Weight (calculated) 37147.30 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.30
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYSGAGLGK PGSGKRRIRD LLTQSDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GSHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFI
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)