suba logo
AT5G59160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : type one serine/threonine protein phosphatase 2
Curator
Summary (TAIR10)
Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.
Computational
Description (TAIR10)
type one serine/threonine protein phosphatase 2 (TOPP2); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 5 (TAIR:AT3G46820.1); Has 7217 Blast hits to 7021 proteins in 626 species: Archae - 78; Bacteria - 572; Metazoa - 2410; Fungi - 1415; Plants - 989; Viruses - 12; Other Eukaryotes - 1741 (source: NCBI BLink).
Protein Annotations
EC:3.1.3.16eggNOG:COG0639eggNOG:KOG0374EMBL:AK317649
EnsemblPlants:AT5G59160EnsemblPlants:AT5G59160.1EnsemblPlants:AT5G59160.2EnsemblPlants:AT5G59160.3
entrez:836034ExpressionAtlas:B9DHU3Gene3D:3.60.21.10GeneID:836034
GO:GO:0004721GO:GO:0046872Gramene:AT5G59160.1Gramene:AT5G59160.2
Gramene:AT5G59160.3hmmpanther:PTHR11668hmmpanther:PTHR11668:SF259InterPro:IPR004843
InterPro:IPR006186InterPro:IPR029052InterPro:IPR031675KEGG:ath:AT5G59160
KO:K06269OMA:CTAARAIPaxDb:B9DHU3Pfam:P48482
Pfam:PF00149Pfam:PF16891PhylomeDB:B9DHU3PRIDE:B9DHU3
PRINTS:PR00114PROSITE:PS00125ProteinModelPortal:B9DHU3RefSeq:NP_001032103.1
RefSeq:NP_200724.1RefSeq:NP_851218.1scanprosite:PS00125SMART:SM00156
SMR:B9DHU3STRING:3702.AT5G59160.1SUPFAM:SSF56300TAIR:AT5G59160
tair10-symbols:PPOtair10-symbols:TOPP2UniGene:At.20932UniGene:At.311
UniProt:B9DHU3UniProt:P48482
Coordinates (TAIR10) chr5:+:23879567..23881102
Molecular Weight (calculated) 35533.80 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.21
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQQGQGSMD PAALDDIIRR LLDYRNPKPG TKQAMLNESE IRQLCIVSRE IFLQQPNLLE LEAPIKICGD IHGQYSDLLR LFEYGGFPPT ANYLFLGDYV
101: DRGKQSLETI CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF SVRLWKVFTD SFNCLPVAAV IDDKILCMHG GLSPDLTNVE QIKNIKRPTD
201: VPDSGLLCDL LWSDPSKDVK GWGMNDRGVS YTFGPDKVAE FLIKNDMDLI CRAHQVVEDG YEFFADRQLV TIFSAPNYCG EFDNAGAMMS VDESLMCSFQ
301: ILKPADRKPR FL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)