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AT2G36310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : uridine-ribohydrolase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
uridine-ribohydrolase 1 (URH1); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 2 (TAIR:AT1G05620.1); Has 6361 Blast hits to 6297 proteins in 1364 species: Archae - 75; Bacteria - 4675; Metazoa - 179; Fungi - 233; Plants - 187; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G36310-MONOMERBioCyc:MetaCyc:AT2G36310-MONOMERBioCyc:RETL1328306-WGS:GSTH-2508-MONOMERBRENDA:3.2.2.3
BRENDA:3.2.2.8EC:3.2.2.3eggNOG:COG1957eggNOG:KOG2938
EMBL:AC006921EMBL:AY054182EMBL:AY066040EMBL:AY086551
EMBL:CP002685EnsemblPlants:AT2G36310EnsemblPlants:AT2G36310.1entrez:818204
Gene3D:3.90.245.10GeneID:818204Genevisible:Q9SJM7GO:GO:0005829
GO:GO:0006152GO:GO:0006218GO:GO:0045437GO:GO:0047622
GO:GO:0047724GO:GO:0072585Gramene:AT2G36310.1gramene_pathway:3.2.2.1
gramene_pathway:3.2.2.2gramene_pathway:3.2.2.3gramene_pathway:3.2.2.7gramene_pathway:PWY-6556
gramene_pathway:PWY-6596gramene_pathway:PWY-6605gramene_pathway:PWY-6607gramene_pathway:PWYQT-4445
hmmpanther:PTHR12304hmmpanther:PTHR12304:SF1HOGENOM:HOG000218838InParanoid:Q9SJM7
InterPro:IPR001910InterPro:IPR023186iPTMnet:Q9SJM7KEGG:ath:AT2G36310
KO:K01240OMA:DWYGGLKPANTHER:PTHR12304PaxDb:Q9SJM7
Pfam:PF01156Pfam:Q9SJM7PhylomeDB:Q9SJM7PIR:B84779
PRIDE:Q9SJM7PRO:PR:Q9SJM7ProteinModelPortal:Q9SJM7Proteomes:UP000006548
RefSeq:NP_565843.1SMR:Q9SJM7STRING:3702.AT2G36310.1SUPFAM:SSF53590
TAIR:AT2G36310tair10-symbols:URH1UniGene:At.19643UniGene:At.67696
UniProt:Q9SJM7
Coordinates (TAIR10) chr2:-:15224692..15226633
Molecular Weight (calculated) 36088.30 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.00
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCGMENCNG GISNGDVLGK HEKLIIDTDP GIDDSMAILM AFQTPELEIL GLTTVFGNVS TQDATRNALL LCEIAGFPDV PVAEGSSEPL KGGIPRVADF
101: VHGKNGLGDV SLPPPSRKKS EKSAAEFLDE KVEEYPGEVT ILALGPLTNL ALAIKRDSSF ASKVKKIVIL GGAFFSLGNV NPAAEANIYG DPEAADVVFT
201: SGADITVVGI NITTQLKLSD DDLLELGNCK GKHSKLISDM CKFYRDWHVK SDGVYGVYLH DPVSFVAVVR PDLFTYKKGV VRVETQGICV GHTLMDQGLK
301: RWNGSNPWVG YSPISVAWTV DVEGVLEYVK AKLMKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)