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AT1G78300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30875866 (2019): plasma membrane
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19329564 (2009): peroxisome
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : general regulatory factor 2
Curator
Summary (TAIR10)
G-box binding factor GF14 omega encoding a 14-3-3 protein
Computational
Description (TAIR10)
general regulatory factor 2 (GRF2); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GF14 protein phi chain (TAIR:AT1G35160.1); Has 2698 Blast hits to 2688 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1259; Fungi - 318; Plants - 766; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
Protein Annotations
BioGrid:29384eggNOG:COG5040eggNOG:KOG0841EMBL:AC013430
EMBL:AF462807EMBL:AY077667EMBL:AY086467EMBL:CP002684
EMBL:M96855EMBL:U09376EnsemblPlants:AT1G78300EnsemblPlants:AT1G78300.1
entrez:844165GeneID:844165Genevisible:Q01525GO:GO:0005773
GO:GO:0005774GO:GO:0005794GO:GO:0005829GO:GO:0005886
GO:GO:0009742Gramene:AT1G78300.1hmmpanther:PTHR18860hmmpanther:PTHR18860:SF26
HOGENOM:HOG000240379IntAct:Q01525InterPro:IPR000308InterPro:IPR023409
InterPro:IPR023410iPTMnet:Q01525KEGG:ath:AT1G78300KO:K06630
MINT:MINT-112708ncoils:CoilOMA:ESACHLAPANTHER:PTHR18860
PaxDb:Q01525Pfam:PF00244Pfam:Q01525PhylomeDB:Q01525
PIR:A47237PIRSF:PIRSF000868PRIDE:Q01525PRINTS:PR00305
PRO:PR:Q01525PROSITE:PS00796PROSITE:PS00797ProteinModelPortal:Q01525
Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511RefSeq:NP_565176.1
scanprosite:PS00796scanprosite:PS00797SMART:SM00101SMR:Q01525
STRING:3702.AT1G78300.1SUPFAM:SSF48445TAIR:AT1G78300tair10-symbols:14-3-3OMEGA
tair10-symbols:GF14 OMEGAtair10-symbols:GRF2UniGene:At.23337UniProt:Q01525
Coordinates (TAIR10) chr1:+:29461883..29463052
Molecular Weight (calculated) 29163.20 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.48
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGREEFVY MAKLAEQAER YEEMVEFMEK VSAAVDGDEL TVEERNLLSV AYKNVIGARR ASWRIISSIE QKEESRGNDD HVTAIREYRS KIETELSGIC
101: DGILKLLDSR LIPAAASGDS KVFYLKMKGD YHRYLAEFKT GQERKDAAEH TLAAYKSAQD IANAELAPTH PIRLGLALNF SVFYYEILNS PDRACNLAKQ
201: AFDEAIAELD TLGEESYKDS TLIMQLLRDN LTLWTSDMQD DAADEIKEAA APKPTEEQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)