AT5G49500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Signal recognition particle, SRP54 subunit protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, protein binding, mRNA binding, GTP binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Signal recognition particle, SRP54 subunit (InterPro:IPR006325); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT1G48900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20077556..20080206 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55266.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 497 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLAELGGRI MSAIQKMNNV TIIDEKALND CLNEITRALL QSDVSFPLVK EMQTNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KSAFAPKKAK 101: PSVVMFVGLQ GEVLEKPQLV PSMLIIIRRK GYKPALVCAD TFRAGAFDQL KQNATKSKIP YYGSYTGSDP VKIAVEGVDR FKKENCDLII VDTSGRHKQQ 201: ASLFEEMRQI SEATKPDLVI FVMDSSIGQT AFEQARAFKQ TVAVGAVIIT KMDGHAKGGG TLSAVAATKS PVIFIGTGEH MDEFEVFDAK PFVSRLLGNG 301: DMSGFVNKLQ EVVPKDQQPE LLEMLSHGKF TLRIMYDQFQ NMLNMGPLKE VFSMLPGMRA EMMPEGHEKE SQAKIKRYMT MMDSMTNEEL DSSNPKVFNE 401: SRIMRIARGS GRIVREVMEM LEEYKRLTTM WGKVKGLKNL EKGNMSALSK NKNSQQLSKV LPAQMLKQIG GMSGLQSLMK QMGSGKDLMG MFGGRDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)