AT5G48400.1::SUBA5

AT5G48400.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plasma membrane 0.963
What is SUBAcon?

Predictors

External Curations

SwissProt : plasma membrane 16381842

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:19452453 (2009): AT5G04140.1:None: PMID:19452453 (2009): AT5G03340.1:None: PMID:19452453 (2009): AT4G39400.1:None: PMID:19452453 (2009): AT5G04930.1:None: PMID:19452453 (2009): AT5G05340.1:None: PMID:19452453 (2009): AT5G03940.1:None: PMID:19452453 (2009): AT4G39980.1:None: PMID:19452453 (2009): AT4G37770.1:None: PMID:19452453 (2009): AT5G04870.1:None: PMID:19452453 (2009): AT5G02490.1:None: PMID:19452453 (2009): AT5G13160.1:None: PMID:19452453 (2009): AT5G09810.1:None: PMID:19452453 (2009): AT4G39800.1:None: PMID:19452453 (2009): AT5G13490.1:None: PMID:19452453 (2009): AT5G07090.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT5G11210.1 plasma membrane [10.47] AT5G48410.1 plasma membrane [10.33] AT1G15520.1 plasma membrane [6.52] AT1G44130.1 extracellular [6.25] AT4G11170.1 cytosol [6.23] AT3G48850.1 mitochondrion [6.15] AT1G32350.1 mitochondrion [5.97] AT5G01550.1 plasma membrane [5.93] AT1G47890.1 extracellular [5.73] AT1G26390.1 extracellular [5.63]	AT4G37770.1 cytosol AT4G39800.1 cytosol AT5G02490.1 cytosol AT5G03340.1 cytosol AT5G07090.1 cytosol AT5G09810.1 cytosol AT5G13160.1 cytosol AT5G05340.1 extracellular AT5G13490.1 mitochondrion AT4G39400.1 plasma membrane AT5G04930.1 plasma membrane AT5G04870.1 peroxisome, plasma membrane AT4G39980.1 plastid AT5G03940.1 plastid AT5G04140.1 plastid

Description (TAIR10)

protein_coding : Glutamate receptor family protein

Curator
Summary (TAIR10)

member of Putative ligand-gated ion channel subunit family

Computational
Description (TAIR10)

ATGLR1.2; FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 1.3 (TAIR:AT5G48410.1); Has 3010 Blast hits to 2965 proteins in 183 species: Archae - 3; Bacteria - 141; Metazoa - 2192; Fungi - 0; Plants - 596; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).

Protein Annotations

EnsemblPlants:AT5G48400	EnsemblPlants:AT5G48400.1	entrez:834895	hmmpanther:PTHR18966
hmmpanther:PTHR18966:SF204	Pfam:PF00060	Pfam:PF00497	Pfam:PF01094
SUPFAM:SSF53850	tair10-symbols:ATGLR1.2	tair10-symbols:GLR1.2	TMHMM:TMhelix

Coordinates (TAIR10)

chr5:+:19616244..19618805

Molecular Weight (calculated)

84293.60 Da

IEP (calculated)

6.62

GRAVY (calculated)

0.05

Length

750 amino acids

Sequence (TAIR10)
(BLAST)

001: MVRICIQTPI LLSFLLVLLF FISNCFASSQ NNDDDKRIRV RVGLVLDLGS VEGKIVRSSV SMALSDFYDN HNDYKTRLSL LVRDSHGEPL LALDSVVDLL
101: QTEGVQAIIG GNSLLEAKLL AELGEKARVP VISLNSPMSL SLSKYTHLIQ ATHNSASEVK GITAFLHGFD WNSVALVLED HDDWRESMHF MVDHFHENNV
201: HVQSKVAFSV TSSEDSLMDR LRELKDLGTT VFVVHLSEVI ATRLFPCAEK LGMMGEGFAW ILTSRSMSSF HDQFIDDLTK EAMEGVVGFK SYIPMSKELH
301: NFTLRWRKTL PVEEVTGSEI TRLSISGVWA HDVAWSLASA AEVTRMPTVT STLLEAIKES RFKGLSGNFQ LDDMKLLSDK FEIVNMIGSG ERRVGFWNSN
401: GSFSNRRQLS STHDNLETII WPGGSAQSPK GRSLRESGRK KLRVLVTSSN RFPRLMKVET DPITHEITIV EGFCIEVFQA SIAPFNYEVE YIRWLNGTNY
501: TKLAYALHSQ KDKYDAAVGD ITITSDRSMY VDFTLPYTEM GLGIVAAKER SMWVFFQPLT PNLWITSAAF FVLTGIIVWL IERAENKEFQ GSWPQQIGVV
601: IWFGFSTLVY AHREKLQHNL SRFVVTVWVF AVLILVTSYT ATLTSMMTVQ QIRFNANEDY VGHLSGSLIA NAALTNSSLR AMRLLGLNTS EDYAQALMNK
701: SVSYIVSELP YLKILLGENP GHFLMVKTQS TTNGFGFVCI LLLHHQLLYS