AT5G11210.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : glutamate receptor 2.5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of Putative ligand-gated ion channel subunit family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
glutamate receptor 2.5 (GLR2.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.6 (TAIR:AT5G11180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:3571214..3574537 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 93475.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 829 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASRQGLSST SETPNKLLLV LPLQKREVVA IIGPGTSMQA PFLINLGNQS KVPIISFSAT SPLLDSLRSP YFIRATHDDS SQVQAISAII ESFRWREVVP 101: IYVDNEFGEG ILPNLVDAFQ EINVRIRYRS AISLHYSDDQ IKKELYKLMT MPTRVFIVHM LPDLGSRLFS IAKEIDMLSK GYVWIVTNGI ADLMSIMGES 201: SLVNMHGVLG VKTYFAKSKE LLHLEARWQK RFGGEELNNF ACWAYDAATA LAMSVEEIRH VNMSFNTTKE DTSRDDIGTD LDELGVALSG PKLLDALSTV 301: SFKGVAGRFQ LKNGKLEATT FKIINIEESG ERTVGFWKSK VGLVKSLRVD KVSHSSRRLR PIIWPGDTIF VPKGWEFPTN AKKLRIAVPK KDGFNNFVEV 401: TKDENTNVPT VTGFCIDVFN TVMSQMPYAV SYEYIPFDTP DGKPRGSYDE MVYNVFLGEF DGAVGDTTIL ANRSHYVDFA LPYSETGIVF LVPVKDGKEK 501: GEWVFLKPLT KELWLVTAAS FLYIGIMVWI FEYQADEEFR EQMIIDKISS VFYFSFSTLF FAHRRPSESF FTRVLVVVWC FVLLILTQSY TATLTSMLTV 601: QELRPTVRHM DDLRKSGVNI GYQTGSFTFE RLKQMRFDES RLKTYNSPEE MRELFLHKSS NGGIDAAFDE VAYIKLFMAK YCSEYSIIEP TFKADGFGFA 701: FPLGSPLVSD ISRQILNITE GDAMKAIENK WFLGEKHCLD STTSDSPIQL DHHSFEALFL IVFVVSVILL LLMLASRGYQ ERQHNASPNL PNDQANAAQE 801: EVNEEGNVGD HIVEVDTALA KVSIVKPKL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)