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AT3G61390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT2G45920.1); Has 3020 Blast hits to 1988 proteins in 330 species: Archae - 23; Bacteria - 254; Metazoa - 666; Fungi - 294; Plants - 411; Viruses - 13; Other Eukaryotes - 1359 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JCGQeggNOG:ENOG410YKG0EMBL:CP002686EnsemblPlants:AT3G61390
EnsemblPlants:AT3G61390.1entrez:825311ExpressionAtlas:F4JE91Gene3D:3.40.50.620
GeneID:825311Gramene:AT3G61390.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF50
InterPro:IPR014729ncoils:CoilPaxDb:F4JE91PRIDE:F4JE91
ProteinModelPortal:F4JE91Proteomes:UP000006548RefSeq:NP_850732.1STRING:3702.AT3G61390.2
SUPFAM:SSF52402TAIR:AT3G61390UniGene:At.34291UniProt:F4JE91
Coordinates (TAIR10) chr3:+:22716418..22717989
Molecular Weight (calculated) 43520.40 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.78
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHVRKRYKI NEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)