AT3G01175.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.812 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1666) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1666); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT5G39785.2); Has 140 Blast hits to 138 proteins in 34 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 7; Plants - 86; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:59484..60845 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46958.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||
| Length | 401 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALLSACWLM IESIVIQDGF LKSSYMKLYM HPLVLFLCQL LIWLYLFFLW LLPPFQALYN AFSSVLFTFS KLVSSSFRVI MFKKEVTCHI ESRQEIKNTL 101: DNLELSTSTH NPVPAFSFSF KYQVDSHLKV RISMQKGKIL EEEEDVDDFF YEYDQEDVVE LLDAKEVEEE HDVDIFDGVN MEKNLEFEIQ TMPIHQEDEA 201: SLTNDDEEEE IVNSDVENDL SFLVSSKRDH PSPLSIASLD SALQDSVTIE NIQTQGVEDD HVYKKYCERM RWYDILSRDR SYGLNVITNQ LTASSLSLWG 301: KTAEKRIKQS MKKDLELVYV AQVCLSWEAL QHQYILVRDS SNPADSRGRF DDDISREFQN FQVLLERFLE DERCEGKRVL SFVQRRFELI SFFQVPRLSG 401: K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)