AT1G15040.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Class I glutamine amidotransferase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1); Has 3704 Blast hits to 3700 proteins in 1207 species: Archae - 28; Bacteria - 2948; Metazoa - 3; Fungi - 7; Plants - 53; Viruses - 0; Other Eukaryotes - 665 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:5180038..5181315 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45365.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVANDLSSK ILPRVLIVSR RTLRKNKYVD FVGEYHLDLI VSSGAVPVIV PRVNGIHSML QSFEPIHGVL LCEGEDVDPS LYADDELSDL SPEDMEEIKK 101: AHAEDMTIDR EKDSIELTLA RLCLERNIPF LGICRGSQIL NVAAGGTLYQ DIDKELGTTM TTTNHIDYDN YDGHRHEARI VEETPLHKLF EEMEIMVNSY 201: HHQGVKRLAQ RFVPMAYAPD GLIEGFYDPN RYDPKEGQFL MGLQFHPERM RLPGSDEFDY PGCALVYQEF VKAVIAFQKK QVNATQVEMK RKTTTLVKSF 301: SQAEFLEANT VLSKQQENRL KQMGATVRNS CVYMKRMKMK EEQERAMDKL SAERLSDMLS FHHMMARLCS NAIKRKLLEP EHTDRTIESS FFLNY |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)