AT5G41080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16441858..16443835 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42018.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.58 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALRTVLVSD VPSLPDSVYG LSEGLELSKP TSFRLPGFSV IGHRGIGMNV LQSSDRRARG VKENSILSFN SAAKYPIDFI EFDVQVTKDD CPVIFHDDFI 101: YSEENGIVNE SRVTDLSLSE FLLYGPQKET EKIGKTLMRK SKEGKVLKWD VDLDDSLCTL QEAFEQVEQT LGFNIELKFD DQTVYEREFL VHILRSVLQV 201: VSNYAKDRPV IFSSFQPDAA KLVRELQSTY PVFFLTDAGN EIHNDERRNS LEEAIQVCLE GGLQGIVSEV KGVFRNPAAI SKIKESNLSL LTYGKLNNVG 301: EAVYMQYVMG IDGVIVDFVE EIIESTTRMM IRPPPSSSPL PSPSKDDDVA ITRPEFSQKE ISFLLKLLSQ LIQH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)