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AT5G22920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CHY-type/CTCHY-type/RING-type Zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G25560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2141-MONOMEReggNOG:ENOG410XXHFeggNOG:KOG1940EMBL:AB005243
EMBL:AY052362EMBL:BT002635EMBL:CP002688EMBL:DQ059131
EnsemblPlants:AT5G22920EnsemblPlants:AT5G22920.1entrez:832356Gene3D:2.20.28.10
Gene3D:3.30.40.10GeneID:832356GO:GO:0008270GO:GO:1902456
Gramene:AT5G22920.1hmmpanther:PTHR21319hmmpanther:PTHR21319:SF14HOGENOM:HOG000231827
InterPro:IPR001841InterPro:IPR004039InterPro:IPR008913InterPro:IPR013083
InterPro:IPR017921KEGG:ath:AT5G22920KO:K10144OMA:DCGATSN
Pfam:PF05495Pfam:PF13639Pfam:PF14599Pfscan:PS50089
Pfscan:PS51266Pfscan:PS51270PhylomeDB:Q9FFB6PROSITE:PS50089
PROSITE:PS51266PROSITE:PS51270Proteomes:UP000006548Reactome:R-ATH-110320
RefSeq:NP_197683.1SMART:SM00184SMR:Q9FFB6STRING:3702.AT5G22920.1
SUPFAM:0053828SUPFAM:0053829SUPFAM:SSF57850TAIR:AT5G22920
UniGene:At.19948UniProt:Q9FFB6
Coordinates (TAIR10) chr5:+:7665143..7667031
Molecular Weight (calculated) 33550.80 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.65
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMGFHENEQ NQEFANLMEI GSGHYGCSHY RRRCKIRAPC CDEIFDCRHC HNEAKDSLHI EQHHRHELPR HEVSKVICSL CETEQDVQQN CSNCGVCMGK
101: YFCSKCKFFD DDLSKKQYHC DECGICRTGG EENFFHCKRC RCCYSKIMED KHQCVEGAMH HNCPVCFEYL FDSTRDITVL RCGHTMHLEC TKDMGLHNRY
201: TCPVCSKSIC DMSNLWKKLD EEVAAYPMPK MYENKMVWIL CNDCGSNTNV RFHLIAHKCS SCGSYNTRQT QRGSDSHSCS SGMPQVVGST G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)