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AT1G30820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTP synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT2G34890.1); Has 10946 Blast hits to 10907 proteins in 2949 species: Archae - 238; Bacteria - 5576; Metazoa - 256; Fungi - 232; Plants - 177; Viruses - 0; Other Eukaryotes - 4467 (source: NCBI BLink).
Protein Annotations
EC:6.3.4.2eggNOG:COG0504eggNOG:KOG2387EMBL:CP002684
EnsemblPlants:AT1G30820EnsemblPlants:AT1G30820.1entrez:839964Gene3D:3.40.50.300
Gene3D:3.40.50.880GeneID:839964GO:GO:0003883GO:GO:0005524
GO:GO:0006541GO:GO:0044210Gramene:AT1G30820.1gramene_pathway:6.3.4.2
gramene_pathway:PWY-5687HAMAP:MF_01227InParanoid:F4I6G9InterPro:IPR004468
InterPro:IPR017456InterPro:IPR017926InterPro:IPR027417InterPro:IPR029062
iPTMnet:F4I6G9KEGG:00240+6.3.4.2KEGG:ath:AT1G30820KO:K01937
MEROPS:C26.964OMA:CRCTTALPaxDb:F4I6G9Pfam:PF00117
Pfam:PF06418Pfscan:PS51273PRIDE:F4I6G9PROSITE:PS51273
ProteinModelPortal:F4I6G9Proteomes:UP000006548Reactome:R-ATH-499943RefSeq:NP_174368.1
SMR:F4I6G9STRING:3702.AT1G30820.1SUPFAM:SSF52317SUPFAM:SSF52540
TAIR:AT1G30820TIGRfam:TIGR00337TIGRFAMs:TIGR00337UniGene:At.23640
UniPathway:UPA00159UniProt:F4I6G9
Coordinates (TAIR10) chr1:-:10945251..10948825
Molecular Weight (calculated) 65732.40 Da
IEP (calculated) 7.23
GRAVY (calculated) -0.12
Length 600 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYVLVTGGV VSGLGKGVTA SSIGVLLKAC GLRVTSIKID PYLNTDAGTM SPFEHGEVFV LDDGGEVDLD LGNYERFLDI KLTRDNNITT GKIYQHVIAK
101: ERKGDYLGKT VQVVPHVTDA IQDWIERVAV IPVDGEEDPA DVCVIELGGT IGDIESAPFI EALGQFSYRV GPGNFCLVHV SLVPVLNVVG EQKTKPTQHS
201: VKGLRGLGLT PDILACRSTK PLEDNVKEKL AQFCHVPLEY IFTLYDVPNI WRIPLLLKDQ KAHLAISKVL NLASILNEPS LGEWTSRAEL CDNLHVPVRI
301: AVVGKYTGLS DAYLSVLKAL LHASVACRKK LVVDWVPACD LEKETEKENP DAYKAAWKLL KGVDGILVPG GFGDRGVEGK ILAAKYAREN KIPFLGICLG
401: MQIAVIEFAR SVLSLQDANS TEFNPETKHP CIIFMPEGSK THMGGTMRLG SRKSIFNVKD SKSAKLYENK SFVDERHRHR YEVNPDMVER LEKAGLSFAA
501: KDETGKRMEI IELPNHPFFI GAQFHPEFKS RPGKASPLFL GLIAASCGEL DTVLNPASAH QHSISNGPTN IFINGTSKKS PNGLADVRYN NGYCNGLYTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)