AT2G39570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.585 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ACT domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ACT domain-containing protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT-like superfamily protein (TAIR:AT2G36840.1); Has 465 Blast hits to 403 proteins in 46 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 388; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:16507963..16509741 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46040.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGILNDDAVL IEPGKISGDP TVVTVNCPDE SGLGSTLCRI ILEFGLSITR ADFSTDGRWC YIVFWVTPDI SSPKIDWDSL KNRLLSACPS CLGSFYFCLQ 101: SNVSKPPSLY LLKFFCRDRK GLLHDVTKVL TELEFTIQRV KVMTTPDGRV LDMFFITDAM DLLHTKQRQT KTCDHLTAVL GEHGVSCELE LAGPELESVQ 201: RFSSLPPLAA DELFGPDGFD ISGSSSNKAV LTVDNQLSPA HTLLQIRCVD QKGLFYDILR TSKDCDVHIA YGRFSSKVKG YRNLELFVRG TDGNKIMDPK 301: HQANFCARLK EEMVCPLRVI IVNRGPDTEL LVANPVELSG KGRPRVFYDV TLALKSLGIC IFSAEIGRHS TLDRQWEVYR FLLDESREFP LASLRARNQV 401: VDRVTKTLMG W |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)