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AT3G61060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phloem protein 2-A13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phloem protein 2-A13 (PP2-A13); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation, response to wounding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-A12 (TAIR:AT1G12710.1); Has 444 Blast hits to 438 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10592DNASU:825278eggNOG:ENOG410IG7CeggNOG:ENOG410Y934
EMBL:AL358732EMBL:AY034967EMBL:BT000895EMBL:CP002686
EnsemblPlants:AT3G61060EnsemblPlants:AT3G61060.1entrez:825278ExpressionAtlas:Q9LEX0
GeneID:825278Genevisible:Q9LEX0GO:GO:0005634GO:GO:0016567
hmmpanther:PTHR31960hmmpanther:PTHR31960:SF3HOGENOM:HOG000239667InParanoid:Q9LEX0
IntAct:Q9LEX0InterPro:IPR001810InterPro:IPR025886KEGG:ath:AT3G61060
PaxDb:Q9LEX0Pfam:PF14299Pfam:Q9LEX0Pfscan:PS50181
PhylomeDB:Q9LEX0PIR:T50527PRIDE:Q9LEX0PRO:PR:Q9LEX0
PROSITE:PS50181ProteinModelPortal:Q9LEX0Proteomes:UP000006548RefSeq:NP_567108.2
SMART:SM00256STRING:3702.AT3G61060.2SUPFAM:SSF81383TAIR:AT3G61060
tair10-symbols:AtPP2-A13tair10-symbols:PP2-A13UniGene:At.44960UniGene:At.74763
UniPathway:UPA00143UniProt:Q9LEX0
Coordinates (TAIR10) chr3:+:22603166..22604336
Molecular Weight (calculated) 33116.60 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.35
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)