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AT3G60020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : SKP1-like 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 5 (SK5); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 4 (TAIR:AT1G20140.1); Has 1410 Blast hits to 1406 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 177; Plants - 527; Viruses - 11; Other Eukaryotes - 158 (source: NCBI BLink).
Protein Annotations
BioGrid:10486eggNOG:COG5201eggNOG:KOG1724EMBL:AL138647
EMBL:CP002686EMBL:DQ056631EnsemblPlants:AT3G60020EnsemblPlants:AT3G60020.1
entrez:825172GeneID:825172Genevisible:Q9M1X4GO:GO:0005634
GO:GO:0006511GO:GO:0016567Gramene:AT3G60020.1hmmpanther:PTHR11165
HOGENOM:HOG000172184IntAct:Q9M1X4InterPro:IPR001232InterPro:IPR011333
InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897KEGG:ath:AT3G60020
KO:K03094OMA:EWDADFMPaxDb:Q9M1X4Pfam:PF01466
Pfam:PF03931Pfam:Q9M1X4PhylomeDB:Q9M1X4PIR:T47826
PIRSF:PIRSF028729PRIDE:Q9M1X4PRO:PR:Q9M1X4ProteinModelPortal:Q9M1X4
Proteomes:UP000006548RefSeq:NP_567091.1SMART:SM00512SMR:Q9M1X4
STRING:3702.AT3G60020.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT3G60020
tair10-symbols:ASK5tair10-symbols:SK5UniGene:At.62418UniPathway:UPA00143
UniProt:Q9M1X4
Coordinates (TAIR10) chr3:-:22164844..22165305
Molecular Weight (calculated) 17444.80 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.28
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTKIMLKSS DGKSFEIDED VARKSIAINH MVEDGCATDV IPLRNVTSKI LKIVIDYCEK HVKSKEEEDL KEWDADFMKT IETTILFDVM MAANYLNIQS
101: LLDLTCKTVS DLLQADLLSG KTPDEIRAHF NIENDLTAEE VAKIREENQW AFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)