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AT2G20670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF506)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF506) ; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G32480.1); Has 375 Blast hits to 373 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVXVeggNOG:ENOG410YC9TEMBL:AC006234EMBL:AC007048
EMBL:AY087386EMBL:CP002685EnsemblPlants:AT2G20670EnsemblPlants:AT2G20670.1
entrez:816595GeneID:816595GO:GO:0009507Gramene:AT2G20670.1
hmmpanther:PTHR31579hmmpanther:PTHR31579:SF11InterPro:IPR006502KEGG:ath:AT2G20670
OMA:CEFELAKPANTHER:PTHR31579Pfam:PF04720PhylomeDB:Q9SIU5
PIR:H84591Proteomes:UP000006548RefSeq:NP_565481.1STRING:3702.AT2G20670.1
TAIR:AT2G20670TIGRfam:TIGR01615TIGRFAMs:TIGR01615UniGene:At.23709
UniGene:At.74180UniProt:Q9SIU5
Coordinates (TAIR10) chr2:-:8912163..8913472
Molecular Weight (calculated) 33204.40 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.58
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)