AT1G54740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3049) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT5G22390.1); Has 534 Blast hits to 376 proteins in 66 species: Archae - 0; Bacteria - 26; Metazoa - 75; Fungi - 14; Plants - 157; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20430839..20431738 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 34828.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||
| Length | 299 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSFYKRSFHS FLGQTNTKGM PFESGLGHDE TQSHGLMLCT EYLGFESYDM RMSDNEVENK MTCHAEVETE RVEAKRRKTK ENVVVQAQKK QFPPPLSSLN 101: SRGQRYFYLR PVRKDGRLEL TQVMVDRPEI FHVSRVDGRL RLHFVDGVEN PIRAYSGPQE IVALEEEPKG LGNEKEGGEI SRSDLECGRE INEDDNDGAC 201: NQGMDLSIIS DDSGARSWRC KSSHDVSVNS NNDVAHFHDD HDTREWMYNS GFKIVASRNH DENNHHHYHH RHRHHIHPYH HHNSNNNMNL WTRTYVRTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)