AT5G26740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF300) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF300); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT3G05940.1); Has 921 Blast hits to 913 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 193; Plants - 245; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9292436..9294407 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46999.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.12 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADLIPFYLN IVAFLCTVGA IALAIFHIYR HLLNYTEPTY QRYIVRIIFM VPVYAFMSFL SLVLPKSSIY FDSIREVYEA WVIYNFLSLC LAWVGGPGSV 101: VLSLSGRSLK PSWSLMTCCF PPLTLDGRFI RRCKQGCLQF VILKPILVAV TLVLYAKGKY KDGNFNPDQA YLYLTIIYTI SYTVALYALV LFYMACRDLL 201: QPFNPVPKFV IIKSVVFLTY WQGVLVFLAA KSGFIKSAEA AAHFQNFIIC VEMLIAAACH FYAFPYKEYA GANVGGSGSF SGSLSHAVKL NDFYHDTVHQ 301: FAPTYHDYVL YNHQDGGDEG TKKYRSRTFV PTGQEMDAMR KNKPVYANKI DGVSVSSSLS SEASSPKSSS VTSDPARSDA VKSSLLVDAS DSLETMYDMS 401: LIDIDLSSFP SNVPSASESG PR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)