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AT2G40420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Encodes a putative amino acid transporter.
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G56200.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1305EMBL:AK228702EMBL:CP002685
EnsemblPlants:AT2G40420EnsemblPlants:AT2G40420.1entrez:818635GeneID:818635
GO:GO:0005774GO:GO:0016021Gramene:AT2G40420.1hmmpanther:PTHR22950
hmmpanther:PTHR22950:SF323HOGENOM:HOG000238856InterPro:IPR013057KEGG:ath:AT2G40420
OMA:IIVIIAWPfam:PF01490PhylomeDB:Q0WQJ3Proteomes:UP000006548
Reactome:R-ATH-210455Reactome:R-ATH-210500Reactome:R-ATH-352230RefSeq:NP_181573.3
STRING:3702.AT2G40420.1TAIR:AT2G40420TMHMM:TMhelixUniGene:At.12201
UniGene:At.22034UniProt:Q0WQJ3
Coordinates (TAIR10) chr2:+:16877300..16878982
Molecular Weight (calculated) 47672.90 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.89
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPAIKAPLL PNQEPSSSSS ENHGSFAGAV FNISTSIVGA GIMAIPAAFK VLGVIPSLSI IVIIAWLSNV SAGFLMKSSL AGESTTYAGV MKESFGKSGA
101: VAVTVVTMVV TFGSMIIFSI IIGDVISGNE KDGIIHLGLL QEWFGSHWWN TRFFGLLFIF VFLFLPLVLC RRVERLAFSS AISFLLALLF VVISSVLAII
201: ALVQGKTKPP RLFPELNDGG LSFFSLFTAS PVIVTAFTFH FNVHPVAFEL KDPLNVLSAT RISVILCATI YSATGLFCYL LFGDSTMTDV LMNFDQSTSS
301: SVGSLLNDIV RLSYAIHLML VFPLLNFSLR ANLDELLFPM KLSLVEDNKR FFALTFPLLI SCFLGAIAIP DIWYFFQFLG STSTVSIAFI FPAAIVLRNV
401: NGFSTLREKI VASVMLVLAV ATSIIAISTN IYTFTATEET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)