AT1G07040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2161225..2163035 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40640.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MISLHSSAIK ASLYGSFPSS LRSTLSVSFS AGSLIRLPSV GKRNLSVVVS SGRDSSMSSN NVSRGSSSKV AAESFFRSVL GQMETVYLNR NPTPKSVLEL 101: VRSVDDQQLC YDHLAFRTFG IGGYGIDSLA SFFLDYGYTP MDELKFPAKK LRALWFAPPN ASAVPGGSGV NGPLPRVFIS ELLVDQMSSQ TQDVIRKYTE 201: ASPNGKKYAG LSSALGTLTW EKPLSSEFEQ LARESEYAAW TLVNGYALNH VTISVHRLKS HLNKIKKLNQ FLEEKGIKLN SEGGVLKVSP DGGLQQSSTV 301: ADSISFKFAD GVTKSIPCSY IEFAERLVLP QYQNIPESEI QESHRRDGFE VGNADKIFES TFQEQLSRRT G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)