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AT1G11380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1); Has 314 Blast hits to 313 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 8; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGK2eggNOG:ENOG410YNGIEMBL:AY084625EMBL:BT024901
EMBL:CP002684EnsemblPlants:AT1G11380EnsemblPlants:AT1G11380.1entrez:837680
GeneID:837680GO:GO:0016021Gramene:AT1G11380.1hmmpanther:PTHR15907
hmmpanther:PTHR15907:SF36HOGENOM:HOG000070857InterPro:IPR006461KEGG:ath:AT1G11380
OMA:YHLICPCPfam:PF04749PhylomeDB:Q8LFV5Proteomes:UP000006548
RefSeq:NP_563889.1STRING:3702.AT1G11380.1TAIR:AT1G11380TIGRfam:TIGR01571
TIGRFAMs:TIGR01571TMHMM:TMhelixUniGene:At.42137UniProt:Q8LFV5
Coordinates (TAIR10) chr1:+:3832695..3833921
Molecular Weight (calculated) 27944.50 Da
IEP (calculated) 4.78
GRAVY (calculated) 0.09
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MADLDKLEGG GGGGAVVIAD IRADEGGGAV EERERLTELE GISVLDFDLL CSTVALQTQG KWRKLESSEG EDATEDDYGG GVLRLWEGDV MDCFEDRHLC
101: IESACCPCYR FGKNMTRTGF GSCFLQGAVH MILIAGFLFN VVAFAVTKRH CFLYLAIAFV LLIGSYLGFF RMLIRRKFNI RGTDSFLDDF IHHLVCPFCT
201: LTQESKTLEM NNVHDGIWHG RGDTLCIGGY SEGKAFLELH SPPVIASTMS SSQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)