AT3G13175.1::SUBA5

AT3G13175.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
endoplasmic reticulum 0.650
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
PMID:in house (None): endoplasmic reticulum		PMID:21798944 (2011): AT3G29270.1:None: PMID:21798944 (2011): AT3G60600.1:None: PMID:21798944 (2011): AT4G35580.1:None: PMID:21798944 (2011): AT5G22290.1:None: PMID:21798944 (2011): AT5G41600.1:None: PMID:21798944 (2011): AT3G10260.1:None: PMID:21798944 (2011): AT2G20130.1:Y2H: PMID:21798944 (2011): AT3G50910.1:Y2H: PMID:21798944 (2011): AT4G19030.1:Y2H: PMID:21798944 (2011): AT1G27300.1:Y2H:

FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g13175-GFP (full-length)	mitochondrial marker-RFP	overlay

Images by Sandra Tanz

Arabidopsis cell culture (endoplasmic reticulum marker)

At3g13175-GFP (full-length)	endoplasmic reticulum marker-RFP	overlay

Images by Sandra Tanz

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT1G29270.1 nucleus [6.74] AT2G28790.1 extracellular [6.21] AT1G62500.1 extracellular [6.07] AT5G28640.1 nucleus [5.91] AT3G17680.1 nucleus [5.71] AT1G73620.1 extracellular [5.53] AT1G78430.1 nucleus [4.96] AT1G46264.1 nucleus [4.76] AT5G47500.1 extracellular [4.75] AT3G52910.1 nucleus [4.73]	AT2G20130.1 endoplasmic reticulum AT5G41600.1 endoplasmic reticulum AT1G27300.1 golgi AT4G35580.1 nucleus AT5G22290.1 nucleus AT3G50910.1 mitochondrion, nucleus AT3G29270.1 plasma membrane AT4G19030.1 plasma membrane AT3G60600.1 endoplasmic reticulum, plasma membrane AT3G10260.1 vacuole

Description (TAIR10)

protein_coding :

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410J3MI	eggNOG:ENOG410Z27R	EMBL:AF380633	EMBL:AP000375
EMBL:AY054123	EMBL:CP002686	EnsemblPlants:AT3G13175	EnsemblPlants:AT3G13175.1
entrez:820507	GeneID:820507	GO:GO:0016021	Gramene:AT3G13175.1
hmmpanther:PTHR34125	IntAct:Q9LK55	KEGG:ath:AT3G13175	OMA:QHEDILF
PhylomeDB:Q9LK55	Proteomes:UP000006548	RefSeq:NP_566446.1	STRING:3702.AT3G13175.1
TAIR:AT3G13175	TMHMM:TMhelix	UniGene:At.8127	UniProt:Q9LK55

Coordinates (TAIR10)

chr3:-:4235260..4235580

Molecular Weight (calculated)

11702.40 Da

IEP (calculated)

4.63

GRAVY (calculated)

0.86

Length

106 amino acids

Sequence (TAIR10)
(BLAST)

001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD