AT1G73620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pathogenesis-related thaumatin superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G18250.1); Has 1554 Blast hits to 1550 proteins in 171 species: Archae - 0; Bacteria - 25; Metazoa - 54; Fungi - 76; Plants - 1392; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27681432..27682954 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28215.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.74 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||
| Length | 264 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNEKCEVAL PLKLKSEKPS MASSSSLFLL PLLLLVSQAS ASTVIFYNKC TYTVWPGIQP SSGQSLLAGG GFKLSPNRAY TLQLPPLWSG RFWGRHGCSF 101: DRSGRGRCAT GDCGGSFLCN GAGGVPPATL AEITLGHDMD FYDVSLVDGY NLAMSIMPVK GTGKCTYAGC VSDLNRMCPV GLQVRSRDGT QVVACKSACS 201: AFNSPRYCCT GLFGNPQSCK PTAYSKIFKV ACPKAYSYAY DDPTSIATCS KANYVVTFCP HRGR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)