AT3G03130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits to 3690 proteins in 504 species: Archae - 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:721439..723564 | ||||||||||||||||||||
| Molecular Weight (calculated) | 57437.60 Da | ||||||||||||||||||||
| IEP (calculated) | 4.28 | ||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||
| Length | 520 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFHSLPRRD LQFFCKRNKI PANMTNIAMA DALRDLEIVE GMDEFMDPSR DQSPTSVARN LPSAARTAAR TTRRKSTKDE TQSSELVTRS CYVVSKSLAG 101: EMDQENKDMN MLQNPSVPQS RAVKLDVNDI MPEANVSKTP AARSTRRAQA AASSKKDESV QRVYSTRRSV RLLEESMADL SLKTNVPVKK HEDSPAGSKF 201: QAKSDENSEN TDKGGVMSGR DLNDSLEKEW DGSKNDPDLD ILYGDLGDIT FFDASTSKEH LNRTDSSTVS ASDSFVLVNE HETSQEDGFV VVDHATSTTT 301: TNTLACNKES EPEQMKIDSE SESEETEYET DPWEGDDFGV AVHTNQEAFE SKVSASDNVS KVDSVATVLI ADESKELDFS SSPLAVEELE EDSDEWSDYE 401: IGEVELEENS CGSEESIEIE SEEAPVSDKK TPASSSSSSL AGNETRTSLS PFEAESILES EEDKEMAVNN NGEGKAEAEV KKTKKKKTID EELKDVSMRQ 501: LTKMVKELAI KSKQQHKGPE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)