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AT3G12180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cornichon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 605 Blast hits to 605 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 159; Plants - 93; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:5729eggNOG:ENOG4111MWHeggNOG:KOG2729EMBL:AC069472
EMBL:AK227896EMBL:BT006194EMBL:CP002686EnsemblPlants:AT3G12180
EnsemblPlants:AT3G12180.1entrez:820395GeneID:820395Genevisible:Q9C7D7
GO:GO:0005622GO:GO:0016021GO:GO:0035556Gramene:AT3G12180.1
hmmpanther:PTHR12290HOGENOM:HOG000214661InParanoid:Q9C7D7InterPro:IPR003377
KEGG:ath:AT3G12180OMA:RIAKIAYPaxDb:Q9C7D7Pfam:PF03311
Pfam:Q9C7D7PhylomeDB:Q9C7D7PRIDE:Q9C7D7PRO:PR:Q9C7D7
ProteinModelPortal:Q9C7D7Proteomes:UP000006548RefSeq:NP_187825.1SMART:SM01398
STRING:3702.AT3G12180.1TAIR:AT3G12180TMHMM:TMhelixUniGene:At.39633
UniProt:Q9C7D7
Coordinates (TAIR10) chr3:+:3883464..3884570
Molecular Weight (calculated) 17368.50 Da
IEP (calculated) 5.61
GRAVY (calculated) 0.83
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MAWDLFLWIV SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLV IPEFILQGSL CLLFLLTWHW VFFLVAVPVT VYHAMLYKER RYLIDVTEVF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)