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AT3G56110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.B1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prenylated RAB acceptor 1.B1 (PRA1.B1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B2 (TAIR:AT2G40380.1); Has 577 Blast hits to 577 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 114; Plants - 309; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
BioGrid:10093eggNOG:COG5130eggNOG:KOG3142EMBL:AJ249560
EMBL:AL163763EMBL:AY054569EMBL:AY064659EMBL:AY084557
EMBL:CP002686EnsemblPlants:AT3G56110EnsemblPlants:AT3G56110.1EnsemblPlants:AT3G56110.2
entrez:824777GeneID:824777Genevisible:Q9LYN0GO:GO:0005783
GO:GO:0005794GO:GO:0010008GO:GO:0016021GO:GO:0016192
Gramene:AT3G56110.1Gramene:AT3G56110.2hmmpanther:PTHR19317hmmpanther:PTHR19317:SF9
HOGENOM:HOG000238420InParanoid:Q9LYN0InterPro:IPR004895KEGG:ath:AT3G56110
OMA:GWMFLYLPaxDb:Q9LYN0Pfam:PF03208Pfam:Q9LYN0
PhylomeDB:Q9LYN0PIR:T47728PRIDE:Q9LYN0PRO:PR:Q9LYN0
Proteomes:UP000006548RefSeq:NP_001190100.1RefSeq:NP_191170.1STRING:3702.AT3G56110.1
TAIR:AT3G56110tair10-symbols:PRA1.B1TCDB:9.A.49.1.4TMHMM:TMhelix
UniGene:At.5058UniProt:Q9LYN0
Coordinates (TAIR10) chr3:-:20822228..20822857
Molecular Weight (calculated) 22619.70 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.54
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)