AT2G01970.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Endomembrane protein 70 protein family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Endomembrane protein 70 protein family; INVOLVED IN: transport; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT1G14670.1); Has 1574 Blast hits to 1528 proteins in 319 species: Archae - 0; Bacteria - 2; Metazoa - 611; Fungi - 238; Plants - 459; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:452197..454819 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 68052.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 592 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRLPTTLLLF IGALIFSGAG TVRSDASDHR YKDGDSVPLY ANKVGPFHNP SETYRYFDLP FCIPEGVKDK KEALGEVLNG DRLVSAPYKL NFRDEKDSEV 101: YCKKKLSREE VEHFRRAVEK DYYFQMYYDD LPIWGFIGKV DKESKSDPSE FKYFLYKHIQ FEILYNKDRV IEINARMDPH SLVDLTEDKE VDAEFMYTVK 201: WKETETSFEK RMDKYAMSSS LPHHLEIHWF SIINSCVTVL LLTGFLATIL MRVLKNDFMK YAQDEEAADD QEETGWKYIH GDVFRFPKNK SLFAASLGSG 301: TQLFTLTIFI FMLSLVGVFY PYNRGALFTA LVVIYALTSG IAGYTASSFY CQLEGKNWVR NLLLTGGLFC GPLFLTFCFL NTVAIAYSAT AALPFGTIIV 401: IVLIWTLVTS PLLVLGGIAG KNSKAEFQAP VRTTKYPREI PPLPWYRSAV PQMAMAGFLP FSAIYIELYY IFASVWGHRI YTIYSILFIV FIILLIVTAF 501: ITVALTYFQL AAEDHEWWWR SFLCGGSTGL FIYAYCLYYY YARSDMSGFM QTSFFFGYMA CICYGFFLML GTVGFRAALL FVRHIYRSIK CE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)