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AT4G30850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heptahelical transmembrane protein2
Curator
Summary (TAIR10)
heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors
Computational
Description (TAIR10)
heptahelical transmembrane protein2 (HHP2); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 3 (TAIR:AT2G24150.1); Has 1891 Blast hits to 1806 proteins in 387 species: Archae - 0; Bacteria - 348; Metazoa - 867; Fungi - 353; Plants - 188; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
BioGrid:14496eggNOG:COG1272eggNOG:KOG0748EMBL:AL022198
EMBL:AL161577EMBL:AY074328EMBL:AY267331EMBL:BT021124
EMBL:BT025258EMBL:CP002687EnsemblPlants:AT4G30850EnsemblPlants:AT4G30850.1
EnsemblPlants:AT4G30850.2entrez:829209GeneID:829209Genevisible:Q84N34
GO:GO:0004872GO:GO:0009725GO:GO:0009744GO:GO:0016021
Gramene:AT4G30850.1Gramene:AT4G30850.2hmmpanther:PTHR20855hmmpanther:PTHR20855:SF47
HOGENOM:HOG000197115InParanoid:Q84N34IntAct:Q84N34InterPro:IPR004254
KEGG:ath:AT4G30850OMA:FACHSRRPANTHER:PTHR20855PaxDb:Q84N34
Pfam:PF03006Pfam:Q84N34PhylomeDB:Q84N34PIR:B85361
PRO:PR:Q84N34ProteinModelPortal:Q84N34Proteomes:UP000006548RefSeq:NP_194814.2
RefSeq:NP_974643.1SMR:Q84N34STRING:3702.AT4G30850.1TAIR:AT4G30850
tair10-symbols:HHP2TMHMM:TMhelixUniGene:At.42676UniGene:At.68018
UniProt:Q84N34
Coordinates (TAIR10) chr4:-:15020540..15022278
Molecular Weight (calculated) 41027.00 Da
IEP (calculated) 9.31
GRAVY (calculated) 0.21
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKRRTVKES TKIRNGKGMD SGEKKRSEKR LMKFEELPRY LKDNEFIHNH YRCEWSIKET FLSAFSWHNE TLNIWTHLCG FAIFTWMMVV SSMETTELGL
101: AGFVSLLSGA TIRWPWPSMA MSKDVYFSSD QTLHHDLNVT HTRSLLNSQG DVNYEAIPKW PWLVFLTGAM GCLICSSMSH LFACHSRRFN LFFWRLDYAG
201: ISLMIVCSFF APIYYAFSCH TYWRLFYLSS ISILGLLAIF TLLSPSLSAP RFRSFRAALF LTMGFSGVIP ATHVLYLHKD HPNVLIALVY ELAMAVLYAT
301: GAAFYVTRIP ERWKPGAFDI AGHSHQIFHV FVVLGALAHS VASLLIMDFR RASPSCAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)