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AT5G54850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.909
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J06PeggNOG:ENOG410YYNZEMBL:AB005232EMBL:BT012523
EMBL:BT014821EMBL:CP002688EnsemblPlants:AT5G54850EnsemblPlants:AT5G54850.1
entrez:835575GeneID:835575Gramene:AT5G54850.1hmmpanther:PTHR36405
hmmpanther:PTHR36405:SF1HOGENOM:HOG000084399KEGG:ath:AT5G54850OMA:CAVKVGT
PhylomeDB:Q9FFU5Proteomes:UP000006548RefSeq:NP_200296.1TAIR:AT5G54850
UniGene:At.29473UniProt:Q9FFU5
Coordinates (TAIR10) chr5:-:22280755..22281363
Molecular Weight (calculated) 21847.20 Da
IEP (calculated) 11.35
GRAVY (calculated) -0.78
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQKLEQIKG GGGSIKIGAT GTVATLMTRE LDSMKQTSPK TPTTRPIRTT IPVSVDCGTS SSTPRRTKPR KSSDEASSSS NVNNVRTPKG HNAKTTHQLS
101: MLGSDNVRTS KGHNAKSIHQ LSMLGSDNVR TPKGHHNTKS THQLPMLGSE NVSLQGTPRR EKRMNIVEIV DVKCGNPDRA WANPITSRLK KLGFSKLNES
201: IG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)