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AT3G55600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Membrane fusion protein Use1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Membrane fusion protein Use1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Use1 (InterPro:IPR019150); BEST Arabidopsis thaliana protein match is: Membrane fusion protein Use1 (TAIR:AT1G54110.1); Has 235 Blast hits to 235 proteins in 85 species: Archae - 1; Bacteria - 13; Metazoa - 90; Fungi - 42; Plants - 82; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJB0eggNOG:ENOG410Y7GXEMBL:BT012630EMBL:CP002686
EnsemblPlants:AT3G55600EnsemblPlants:AT3G55600.1entrez:824725GeneID:824725
GO:GO:0016021Gramene:AT3G55600.1hmmpanther:PTHR13050IntAct:Q6NKR3
InterPro:IPR019150KEGG:ath:AT3G55600OMA:VHYIATLPfam:PF09753
PhylomeDB:Q6NKR3PRO:PR:Q6NKR3Proteomes:UP000006548RefSeq:NP_567024.1
SwissPalm:Q6NKR3TAIR:AT3G55600TMHMM:TMhelixUniGene:At.22251
UniProt:Q6NKR3
Coordinates (TAIR10) chr3:+:20620682..20622341
Molecular Weight (calculated) 26837.90 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.52
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGISKTEIN LRRLLSAAPN QQNQSKLMHY VATLREQLEQ LSEEKTPEGL PRVTKAKVNE YYEKIEAVAS KIASQEPETE VSDEPFAKDS TSGSSPKIED
101: EPRSPTSPQL RRRIVPASSK EQSFDAADAD SSKPIKLDTA AQAHIDKHRK LQEDLTDEMV VLARQLKERS QAISQSVQNT EKILDSTEEA IEQSLASTGH
201: ATTRATKIYS QSSKTSCFQW LLIFAMICVF IMVVLLIRVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)