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AT5G08190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit B12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit B12 (NF-YB12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B13 (TAIR:AT5G23090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5150eggNOG:KOG0871EMBL:AF428400EMBL:AK227164
EMBL:AY087017EMBL:AY125544EMBL:CP002688EnsemblPlants:AT5G08190
EnsemblPlants:AT5G08190.1entrez:830715ExpressionAtlas:Q944I5Gene3D:1.10.20.10
GeneID:830715GO:GO:0003700GO:GO:0005634GO:GO:0006355
Gramene:AT5G08190.1hmmpanther:PTHR11064hmmpanther:PTHR11064:SF35HOGENOM:HOG000178641
InterPro:IPR003958InterPro:IPR009072OMA:IECCIEFPfam:PF00808
PhylomeDB:Q944I5Proteomes:UP000006548RefSeq:NP_568190.1SMR:Q944I5
STRING:3702.AT5G08190.1SUPFAM:SSF47113TAIR:AT5G08190tair10-symbols:NF-YB12
UniGene:At.23541UniProt:Q944I5
Coordinates (TAIR10) chr5:+:2636204..2637125
Molecular Weight (calculated) 18357.70 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.63
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY
101: ETMQDSQRSV KMNSGAEMTE EEAAAEQQRM FAEARARMNG GVTVPQPEQL EEPQQQQQTS LQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)