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AT1G13880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ELM2 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.2); Has 146 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU5WeggNOG:ENOG411076JEMBL:AC068197EMBL:AK227812
EMBL:BT006439EMBL:CP002684EnsemblPlants:AT1G13880EnsemblPlants:AT1G13880.1
entrez:837947GeneID:837947Gramene:AT1G13880.1hmmpanther:PTHR22970
hmmpanther:PTHR22970:SF28HOGENOM:HOG000272663InterPro:IPR000949KEGG:ath:AT1G13880
OMA:HIMENREPhylomeDB:Q9LMG9Proteomes:UP000006548RefSeq:NP_172841.1
SMART:SM01189STRING:3702.AT1G13880.1TAIR:AT1G13880UniGene:At.47470
UniProt:Q9LMG9
Coordinates (TAIR10) chr1:+:4749603..4750967
Molecular Weight (calculated) 48431.70 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.75
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFKRTFDAE DVQELNVKNG RQISYCNKLA KLDEGVPYRL SLEKPGVVGY DISDLYGYKC EDNVDKGFET NAPFSWITTG LSEEDSQSGA TIQSTISHES
101: PESDIPWRPV CSGEEDGYWC PISPRKTVPI GSDYQADIPE CVKEEANDQS GQGVGYDEEQ VTGKCVIPMP DCETEVCKIG KGRKECICLD KGSIRCVQQH
201: IMENREDLFA TIGYDRCLDI GLCEMGEEVA ARLTEDEEDL FHEIVYSNPV SMDRDFWKHL KSAFPSRTMK EIVSYYFNVF ILRRRAIQNR SKSLDVDSDD
301: DEWQVEYDNT FYGAETPSDD KAEKSLSRDE GEEVNANEDS YMSFENQSNA IYSRCPVRNR EESNIGNYWR HCNDLVDQSY SFDPCDSILP DHCWTKNIDL
401: LPTSNIIDEI FGQDHPWDDF SRGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)