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AT1G55520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TATA binding protein 2
Curator
Summary (TAIR10)
TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.
Computational
Description (TAIR10)
TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Protein Annotations
BioGrid:27224eggNOG:COG2101eggNOG:KOG3302EMBL:AC005223
EMBL:BT006488EMBL:CP002684EMBL:X54995EnsemblPlants:AT1G55520
EnsemblPlants:AT1G55520.1EnsemblPlants:AT1G55520.2entrez:841999ExpressionAtlas:P28148
Gene3D:3.30.310.10GeneID:841999Genevisible:P28148GO:GO:0003677
GO:GO:0005634GO:GO:0006352GO:GO:0006355GO:GO:0017025
Gramene:AT1G55520.1Gramene:AT1G55520.2HAMAP:MF_00408hmmpanther:PTHR10126
hmmpanther:PTHR10126:SF23HOGENOM:HOG000105162InParanoid:P28148IntAct:P28148
InterPro:IPR000814InterPro:IPR012295InterPro:IPR030491KEGG:ath:AT1G55520
KO:K03120ncoils:CoilOMA:LIYRMKLPANTHER:PTHR10126
PaxDb:P28148Pfam:P28148Pfam:PF00352PhylomeDB:P28148
PIR:S10945PRIDE:P28148PRINTS:PR00686PRO:PR:P28148
PROSITE:PS00351ProteinModelPortal:P28148Proteomes:UP000006548Reactome:R-ATH-674695
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
RefSeq:NP_175948.1RefSeq:NP_849812.1scanprosite:PS00351SMR:P28148
STRING:3702.AT1G55520.1SUPFAM:SSF55945TAIR:AT1G55520tair10-symbols:ATTBP2
tair10-symbols:TBP2UniGene:At.192UniProt:P28148UniProt:Q53YT7
Coordinates (TAIR10) chr1:-:20726150..20727483
Molecular Weight (calculated) 22397.70 Da
IEP (calculated) 10.31
GRAVY (calculated) -0.05
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)