AT3G03860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.989 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : APR-like 5 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
APR-like 5 (APRL5); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APR-like 7 (TAIR:AT5G18120.1); Has 278 Blast hits to 278 proteins in 73 species: Archae - 0; Bacteria - 38; Metazoa - 82; Fungi - 10; Plants - 137; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:992465..994315 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 33651.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.50 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 300 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSRVSILFV CAIAVSCFTS GSASSPVDFS VCNYEFELFR FDLEAKCPPS LYPTPPIEVD GDSLDRLMAS QHGNAYMSVL FYASWCPFSR AVRPKFDMLS 101: SMFPQIQHLA VEHSQALPSV FSRYGIHSLP SILMVNQTLN ARYHGRKDLI SLIEFYEEAT GLQPVQYVAE GEPTGLNAGD GNLITWLRKG TSIREIFKQD 201: PFLVLSLLFI CLQMAILVFP IAESRMRALW ASYVANLNLG RFGEISQLFN RGIHMVDVRR LWLKLSLVKT RNFHERAKNA QAWASSLASV SLGQTSSDQS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)