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AT1G71090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.911
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Auxin efflux carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT5G01990.1); Has 749 Blast hits to 638 proteins in 173 species: Archae - 11; Bacteria - 75; Metazoa - 0; Fungi - 346; Plants - 230; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0679eggNOG:KOG2722EMBL:AC016972EMBL:AY045993
EMBL:AY079375EMBL:CP002684EnsemblPlants:AT1G71090EnsemblPlants:AT1G71090.1
entrez:843449GeneID:843449GO:GO:0016021GO:GO:0055085
Gramene:AT1G71090.1hmmpanther:PTHR31419hmmpanther:PTHR31419:SF2HOGENOM:HOG000238399
IntAct:Q9C999InterPro:IPR004776KEGG:ath:AT1G71090OMA:LVMMALE
Pfam:PF03547PhylomeDB:Q9C999PIR:D96735Proteomes:UP000006548
RefSeq:NP_565011.1STRING:3702.AT1G71090.1TAIR:AT1G71090TMHMM:TMhelix
UniGene:At.17825UniProt:Q9C999
Coordinates (TAIR10) chr1:+:26812551..26813924
Molecular Weight (calculated) 49882.60 Da
IEP (calculated) 5.41
GRAVY (calculated) 0.59
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)