AT4G10360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6420679..6422108 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30209.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.52 | ||||||||||||||||||||||||||||||||
| Length | 266 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTDSDDGFV SSRQLLLLAS ICSGALMCKI VYDLTRFISP LLFSVYGKLD SKVRMEWNNR GFSTFHAVFT SVASIYFLVI SDQFDENVHG DSVINSTTRL 101: SESVMGISLG YFLADLAMIF WYFPTLGGIE YVFHHFLSMF AIILSVTSGQ SQFYIFLVLL SEATTPFVNL RWYLDNSGQK GSKAYTLNGI ALFLGWLVAR 201: VLLFIFFFVH MYLHFHQVKQ VFPLGFYSLL TIPPALAVMN LLWFWKITKG LIKTLSKAKT SGMKKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)