AT3G05990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19230.1); Has 48781 Blast hits to 12236 proteins in 453 species: Archae - 4; Bacteria - 457; Metazoa - 323; Fungi - 23; Plants - 45747; Viruses - 0; Other Eukaryotes - 2227 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1797116..1799732 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56236.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPLLLLLLT VFSLLSSSLS QPSPPSAILI DCGASSSSVI DGRQWQPDET FVSSGTPKNV SDQVLDEILF TVRSFPLSLD GTHHKFCYVM SVSRGWKYMI 101: RTTYYYGGVN GKGTPPPVFD QIVDGTLWGI VNTTADYADG LASYYEGVFL AQGKSISVCV ASNSYTTSDP FISALELVRL DGTLYNSTDF TTVGMSLVAR 201: HAFGYSGPII RFPDDQFDRF WEPYSLNSTV PNNRKLEVSG FWNLPPSRIF NTDLRATQVQ PLEFTWPPMP LKMATYYIAL YFAHDSDSMG DGSRVFDVSV 301: NGITYYKELS VTPAGAVIFA SRWPLEGLTT LALSPRSGSN LPPLINGGEM FELLSLGGKT LVRDVTALNA IKNSFKNAPA DWSGDPCLPK NYSWSGISCS 401: EGPRIRVVAL NLTNMGVSGS LAPAVAKLTA LSSIWLGNNS LSGSLPDFSS LKRLESLHFE DNLFSGSIPS SLGGVPHLRE LFLQNNNLTG QVPSNLLQKP 501: GLNLRTSGNP FLTQPSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)