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AT1G06840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 17317660
TAIR : plasma membrane 17317660
TAIR : plasma membrane 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06840-MONOMERBioGrid:22437EC:2.7.11.1eggNOG:COG0515
eggNOG:ENOG410IFPDEMBL:AC011001EMBL:CP002684EMBL:FJ708626
EnsemblPlants:AT1G06840EnsemblPlants:AT1G06840.1entrez:837196Gene3D:2.60.120.200
Gene3D:3.80.10.10GeneID:837196Genevisible:C0LGD7GO:GO:0004674
GO:GO:0005524GO:GO:0005886GO:GO:0016021hmmpanther:PTHR27003
hmmpanther:PTHR27003:SF36HOGENOM:HOG000116556InParanoid:C0LGD7InterPro:IPR000719
InterPro:IPR001245InterPro:IPR001611InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013210InterPro:IPR013320InterPro:IPR017441InterPro:IPR032675
iPTMnet:C0LGD7KEGG:ath:AT1G06840OMA:WELMPESPaxDb:C0LGD7
Pfam:C0LGD7Pfam:PF07714Pfam:PF08263Pfam:PF13855
Pfscan:PS50011PhylomeDB:C0LGD7PIR:C86203PRIDE:C0LGD7
PRO:PR:C0LGD7PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011
ProteinModelPortal:C0LGD7Proteomes:UP000006548RefSeq:NP_172169.2scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:C0LGD7STRING:3702.AT1G06840.1
SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G06840TMHMM:TMhelix
UniGene:At.42324UniProt:C0LGD7
Coordinates (TAIR10) chr1:-:2097854..2103208
Molecular Weight (calculated) 105631.00 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.15
Length 953 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSTHHVSRL LIPLLFFFLF CCFSSTFAQD DITNPVEVRA LRVIKESLND PVHRLRNWKH GDPCNSNWTG VVCFNSTLDD GYLHVSELQL FSMNLSGNLS
101: PELGRLSRLT ILSFMWNKIT GSIPKEIGNI KSLELLLLNG NLLNGNLPEE LGFLPNLDRI QIDENRISGP LPKSFANLNK TKHFHMNNNS ISGQIPPELG
201: SLPSIVHILL DNNNLSGYLP PELSNMPRLL ILQLDNNHFD GTTIPQSYGN MSKLLKMSLR NCSLQGPVPD LSSIPNLGYL DLSQNQLNGS IPAGKLSDSI
301: TTIDLSNNSL TGTIPTNFSG LPRLQKLSLA NNALSGSIPS RIWQERELNS TESIIVDLRN NGFSNISGRS DLRPNVTVWL QGNPLCSDGN LLRLCGPITE
401: EDINQGSTNS NTTICSDCPP PYEFSPEPLR RCFCAAPLLV GYRLKSPGFS DFVPYRSEFE QYITSGLSLN LYQLRLDSFQ WQKGPRLRMY LKFFPVFGSN
501: ANNSFIFNRS EVRRIRGMFT GWNIRDEDLF GPYELMNFTL LDVYRDVFPS ASPSGLSNGA VAGIVLGSVA AAVTLTAIIA LIIMRKRMRG YSAVARRKRS
601: SKASLKIEGV KSFTYAELAL ATDNFNSSTQ IGQGGYGKVY KGTLGSGTVV AIKRAQEGSL QGEKEFLTEI ELLSRLHHRN LVSLLGFCDE EGEQMLVYEY
701: MENGTLRDNI SVKLKEPLDF AMRLRIALGS AKGILYLHTE ANPPIFHRDI KASNILLDSR FTAKVADFGL SRLAPVPDME GISPQHVSTV VKGTPGYLDP
801: EYFLTHQLTD KSDVYSLGVV LLELFTGMQP ITHGKNIVRE INIAYESGSI LSTVDKRMSS VPDECLEKFA TLALRCCREE TDARPSMAEV VRELEIIWEL
901: MPESHVAKTA DLSETMTHPS SSSNSSIMKH HYTSMDVSGS DLVSGVAPSV APR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)