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AT2G16250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 14506206
AmiGO : plasma membrane 17317660
TAIR : plasma membrane 14506206
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16287169 (2006): extracellular region
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G39270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G16250-MONOMERBioGrid:1480EC:2.7.11.1eggNOG:ENOG410IGXW
eggNOG:ENOG410XZUPEMBL:AC007047EMBL:CP002685EMBL:FJ708694
EnsemblPlants:AT2G16250EnsemblPlants:AT2G16250.1entrez:816121Gene3D:2.60.120.200
Gene3D:3.80.10.10GeneID:816121Genevisible:C0LGK4GO:GO:0004674
GO:GO:0005524GO:GO:0005886GO:GO:0009505GO:GO:0009506
GO:GO:0016021Gramene:AT2G16250.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF96
HOGENOM:HOG000240381InParanoid:C0LGK4InterPro:IPR000719InterPro:IPR001245
InterPro:IPR001611InterPro:IPR003591InterPro:IPR011009InterPro:IPR013320
InterPro:IPR032675iPTMnet:C0LGK4KEGG:ath:AT2G16250OMA:SQEGDTH
PaxDb:C0LGK4Pfam:C0LGK4Pfam:PF07714Pfam:PF13855
Pfscan:PS50011Pfscan:PS51450PhylomeDB:C0LGK4PIR:C84538
PRIDE:C0LGK4PRO:PR:C0LGK4PROSITE:PS50011PROSITE:PS51450
ProteinModelPortal:C0LGK4Proteomes:UP000006548RefSeq:NP_179220.2SMART:SM00369
SMR:C0LGK4SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT2G16250
TMHMM:TMhelixUniGene:At.52766UniProt:C0LGK4
Coordinates (TAIR10) chr2:-:7039682..7042933
Molecular Weight (calculated) 99710.20 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.13
Length 915 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDQRRSALG FVLLLLCLVL FFDCVVVGQT QSRFSEKLIL LNLRSSLGLR GTDWPIKGDP CVDWRGIQCE NGSIIGINIS GFRRTRIGKL NPQFSVDPLR
101: NLTRLSYFNA SGLALPGTIP EWFGVSLLAL EVLDLSSCSV NGVVPFTLGN LTSLRTLNLS QNSLTSLVPS SLGQLLNLSQ LDLSRNSFTG VLPQSFSSLK
201: NLLTLDVSSN YLTGPIPPGL GALSKLIHLN FSSNSFSSPI PSELGDLVNL VDFDLSINSL SGSVPQELRK LSKLQLMAIG DNLLSGTLPV DLFSAESQLQ
301: TLVLRENGFS GSLPDVCWSL PKLRILDIAK NNFTGLLPYS SYDSDQIAEM VDISSNTFYG ELTPILRRFR IMDLSGNYFE GKLPDYVTGE NVSVTSNCLR
401: NERRQKPSAI CAAFYKSRGL DFDDFGRPNL TQPTSKNASS GISRRTVIIL AAVGGGVAFI LLFVILPIIL VLCMRHRRRA AQRGNNDRPK PAGEASQQPP
501: KGAQTFDLSR LGNAFSYEQL LQATEEFNDA NLIKRGHSGN LFRGFLENGI PVVIKKIDVR EGKSEGYISE LELFSKAGHQ RLVPFLGHCL ENESQKFLVY
601: KFMRHGDLAS SLFRKSENEG DGLKSLDWIT RLKIALGAAE GLSYLHHECS PPLVHRDVQA SSILLDDKFE VRLGSLSEAY AQGDAYQSRI SRLLRLPQSS
701: EPSSSGVTNA ICSYDVYCFG KVLLELVTGK LGISSPDNAL AKEYMEEALP YISTNEKELV TKILDPSLMV DEDLLEEVWA MAIIAKSCLN PKPTRRPLMR
801: HIVNALENPL KVVREDTNSG SGSSRLRTNS SRGSWNAAIF GSWRQSASDV TAVQAGATTS GGGGGGGGNG LRNSGSQGSS GRNNNNNGNS SSSRRRQSSE
901: IVPEPAAYGV VEDNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)