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AT5G43310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COP1-interacting protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
COP1-interacting protein-related; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJWReggNOG:ENOG4111J7IEMBL:CP002688EnsemblPlants:AT5G43310
EnsemblPlants:AT5G43310.1entrez:834349ExpressionAtlas:F4K5Y5GeneID:834349
GO:GO:0005886GO:GO:0016020Gramene:AT5G43310.1hmmpanther:PTHR31008
hmmpanther:PTHR31008:SF0InParanoid:F4K5Y5ncoils:CoilOMA:MFANAAN
PaxDb:F4K5Y5PRIDE:F4K5Y5ProteinModelPortal:F4K5Y5Proteomes:UP000006548
RefSeq:NP_568624.1TAIR:AT5G43310UniGene:At.30123UniProt:F4K5Y5
Coordinates (TAIR10) chr5:-:17379735..17385387
Molecular Weight (calculated) 137403.00 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.81
Length 1237 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKSSTRLDSV AFQLTPTRTR CDLLVTANGK TEKIATGLLD PFLAHLKTAK DQLEKGGYSI ILKPEASDNA AWFTKGTIER FVRFVSTPEV IERVYTLETE
0101: IIQIKEAIGI QNNSEMALTV VSILGLLNTF FVVWSEVLNG ILYKQVKDDH RAKKADSAEG SRPLLQLNEE KAIVLYEPDS HPKQANRSTS SDENSKYTPL
0201: RELFFGFQCF STKRVVKYLI GNMWNCIRAQ VMKVLETRKI MLQKEQGMAF ARAVAAGFEA DDMIPLISFA KTFGASRLMD ACVKFMDLWK KKHETGQWVE
0301: IEATEVMATQ PNISTMNDSG IMFANAANMP GTPENSDAKS PTDNKRNGNQ EYVQGQHRQP MYAPWPVHSP PGTFPVFQGY TMQGMPYYPG YPGASPYPSP
0401: YPSTDDSRRG SGQRKARKHH SSCSEDSESE DQERDNEKSS RRRKSGKVVI RNINYINSKK QDNSGTESDA DDNHEEVARG ECYNGKERAT KGTEADTGDW
0501: QAFQTFLLQD ADRDERSIDH MMEKEIRGKK RQGTGKYDPL AHGERESGKY QERDTADIRN GSVTRRIRGS SDSLMVHQRE NGFENSSDPL NMNGFDTPRN
0601: GLDKRNMDDD SYIVTRVSSA RDEAGRNKRN AIDIGSEISS CYQTDGNERK QVNYEPHDLS LIPERETEKL SAGYDPALEF GSKALKKNSQ AAGGAKKLVK
0701: DPKSRLSKDA ADKRKAPGPI RKGRPTKMSP LDEARARADK LRNFKADLQK MKKEKEEEDR KRIEALKIER QKRIASKSNS AVGQSQLPAQ QTKKQILNKF
0801: SPGSRASKFS DSEPGSLSPL QRLPRRTTSL GSNDFQKFPK NGKLSTVSKS TGNMLTRSIS PLPPAKRESI ATGIRLTRSI SPLPLSKRET RVSLDTQNKS
0901: VSQTRRLSEP KMGNTSAPSS SVRPRRTIAS RKASDAPEIK KLSAIVNYDI AKIASLPELK IKPTKGPSNV MVKGVEKTKS SASGIEPSGN KNKSLCQNDI
1001: DETPVVEKTV VMVLPSSARS ISRDQVKNEK SDVVSENSTI REGVDKEGIV ETMQECGNDL VLVRLETLSD LVTETPKFLT SQSIVAKPYE APYARVSSLE
1101: DPCTVYSDCS QAPPPSLYSN ETEQETVKVL VPEKKISEAS EKSQTKESAS KGLRKLLKFG KKSQSSSVSE HHTESNNASF NSNEDHEPAV TAATTSEAFT
1201: LKNLISQDET PTAAAASQKS SRHFSLLSPF KNKKTVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)