AT1G19835.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.638 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF869) | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2); Has 56433 Blast hits to 30629 proteins in 2025 species: Archae - 861; Bacteria - 7306; Metazoa - 28779; Fungi - 5162; Plants - 3416; Viruses - 109; Other Eukaryotes - 10800 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6856212..6859513 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109818.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 982 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRKSWPWKK KSSEKTATVT EVVDQENGKK PSYIQISFDQ YTNLNGLKDE VKSYEEKVTK LEDQIKDLDL KLSTANADIV AKEVLVKQHS KVAEEAVTGW 101: EKAEAEASAL KTHLETITLA KLTVEDRAAH LDGALKECMR QIRSLKEENE QKLHDVIATK TNQMDNLRAE FESRIGEYEE ELLRCGAEND ALSRSLQERS 201: NMLMRISEEK SQAESEIEHL KNNIESCERE INTLKYETHV ITKELEIRNE EKNMSMRSAE AANKQHLEGV KKIAKLEAEC QRLRTLVRKK LPGPAALAQM 301: KMEVESLGFG DHRQDHRQRR SPVRPSSPLM SPMSHMSQVS EFSLDNMQKF HKENDLLTER LLAMEEETKM LKEALAKRNS ELQVSRNLCA KTANRLQTLE 401: AQMMSKSPTK RGFEMPAEIF SRQNASNPPS MASMSEDGNE DARSVAGSLM SELSQSNKDK ANAKIKKTES ANQLELMDDF LEMEKLACLP NGSNANGSTD 501: HSSADSDAEI PPATQLKKRI SNVLQSLPKD AAFEKILAEI QCAVKDAGVK LPSKSHGANL NGLTEEKVIA MSNETTEEKV TIVEVITQEL SDALSQIYQF 601: VTYLSKEATA CSENRTFSQK VQEFSTTFEG VLGKEKTLVD FLFDLSRVLV EASELKIDVL GFHTSTVEIH SPDCIDKVAL PENKALQKDS SGEHYQNGCS 701: QSSDSEIPDD CNGTSGYEPK LATCKFTTEE FEGLKLEKEK AESNLASCEA DLEATKTKLQ ETEKLLAEVK SDLESAQKSN GMGETQLKCM VESYRSLETR 801: SSELEIELTS LKGKIENLED ELHDEKENHR EALAKCQELE EQLQRNNQNC PNCSVIEDDP KSKQDNELAA AAEKLAECQE TILLLGKQLK SMCPQTEQVA 901: SSPSQEQQAL NPEEEEYATS TNPQDSKLSS PSDKDTPSMN TMKSPVASKH RHTKSNSSSS SSGLTPEKHS RGFSRFFSTK AK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)