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AT3G56640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
plasma membrane 0.500
ASURE: cytosol,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exocyst complex component sec15A
Curator
Summary (TAIR10)
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
Computational
Description (TAIR10)
exocyst complex component sec15A (SEC15A); CONTAINS InterPro DOMAIN/s: Exocyst complex subunit Sec15-like (InterPro:IPR007225); BEST Arabidopsis thaliana protein match is: exocyst complex component sec15B (TAIR:AT4G02350.1); Has 442 Blast hits to 436 proteins in 182 species: Archae - 3; Bacteria - 0; Metazoa - 174; Fungi - 134; Plants - 89; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQAEeggNOG:KOG2176EMBL:AL163972EMBL:CP002686
EnsemblPlants:AT3G56640EnsemblPlants:AT3G56640.1entrez:824831GeneID:824831
Genevisible:Q9LXX6GO:GO:0000145GO:GO:0005829GO:GO:0006904
Gramene:AT3G56640.1hmmpanther:PTHR12702hmmpanther:PTHR12702:SF4HOGENOM:HOG000239758
InParanoid:Q9LXX6InterPro:IPR007225KEGG:ath:AT3G56640KO:K19985
ncoils:CoilOMA:INHDRIPPANTHER:PTHR12702PaxDb:Q9LXX6
Pfam:PF04091Pfam:Q9LXX6PIR:T49065PIRSF:PIRSF025007
PRIDE:Q9LXX6PRO:PR:Q9LXX6ProteinModelPortal:Q9LXX6Proteomes:UP000006548
Reactome:R-ATH-5620916RefSeq:NP_191223.2SMR:Q9LXX6STRING:3702.AT3G56640.1
TAIR:AT3G56640tair10-symbols:SEC15AUniGene:At.53955UniProt:Q9LXX6
Coordinates (TAIR10) chr3:+:20981964..20984336
Molecular Weight (calculated) 90005.30 Da
IEP (calculated) 5.52
GRAVY (calculated) -0.20
Length 790 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEAKPKRRI VTENGDTGED LVLATLIGNG DDVGPLVRHA FEMGRPEPLV HQLKNVARKK EAEIEDLCKT HYEEFIVAVD ELRGVLVDAE ELKSDLASDN
101: FRLQEVGSAL LVKLEELLES YAVKKNVTEA IKMSKICVQA LELCVKCNSY ISEGQFYHAL KTMDLIEKSY LKLIPLKVLK LVIERRIPVI KTHIEKKVCS
201: QFNEWLVHIR SSSKNIGQTA IGLTASARQR EEEMLERQRR AEEQNTGGLG ELAYTLDVED SEQDSVLKFD LTPLYRAYHI HTILGVPERF RDYYYENRLL
301: QLQSDLQITY TQPFVESYQT FLAQVAGYFI VEDRVIRTAG DFLLADQVET MWETAISKIV AILENQFARM DSPTHLLLVK DYVTLLGTTL RQYGYEVGPV
401: LDALDKSRDK YHELLLEECR KQIVTAITED TYQQMVIKKE ADYENNVLSF NLQTSDIMPA FTYIAPFSSM VPDVCRIIRS YIKGSVDYLS YGVNTNFFSV
501: LRKYLDKILI DVLNEVILET ISNNSIGVSQ AMQIAANISF LEKASDYFLR HAAQLCGIPS RSVERPQASL AAKVVLKTSR DAAYLALLNV VNTKLDEFMK
601: LTENVNWTTE EMPQGPHEYI NEVVIYLETV MSTAQQILPM DALYKVGVGA IEHISNSIVS TFLSDSIKRF NANAVSAINH DLRVIENFAD ERYHSSGLNE
701: IYKEGSFRSY LVEARQLINL LSSSQPENFM NPVIRERNYN TLDYKKVATI CEKFKDSADG IFGSLANRNT KLTAKKKSMD MLKKRLKEFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)