AT2G42700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.482 golgi 0.347 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17778464..17782034 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91707.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 838 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALIDVAISC LNSIREIEED VKDAIVYIDA GCTESFQFVG AFPLFLELGA RAVCSLENMT SLDAVADWNS KSDCAKRIVI MTSRLLNDAH RYMLRCLSTH 101: EGVQRCTVFT SISEGSHSAI PDSPLGPDAY REYETLLVQD YNEHTKKSDK ISKDKGVSKF SSALESLTME PIESENVDIS SGGAQGLVVS VHHFPLIICP 201: FTPRAFVLPS QGSVAEASLS RQHEDSLSFG LPPISTGSMS DTDDVPPGAT LTAHFLYQLA LKMELKLEIF SLGDQSKNVG KILTDMSSVY DVARRKRSAG 301: LLLVDRTLDL ITPCCHGDSL FDRIFSSLPR AERFSSQAQL KQGVPSINRP SLDVQVPLGE LLNEEPSKIR DSGLPEGIEA FLRGWDSYTS APQNVGLFNE 401: CDKKSTTNWT ELLNGSLVAT ECFRGTPYLE AMIDRKTKDG SVLVKKWLQE ALRRENISVN VRARPGYATK PELQAMIKAL SQSQSSLLKN KGIIQLGAAT 501: AAALDESQSA KWDTFSSAEM MLNVSAGDTS QGLAAQISDL INKSAVAELQ AKKNEKPDSS SRGLLSFRDA LLLTIVGYIL AGENFPTSGS GGPFSWQEEH 601: FLKEAIVDAV LENPSAGNLK FLNGLTEELE GRLNRLKSEE TKEIPSDDQL DIDALDDDPW GKWGDEEEEE VDNSKADESY DDMQLKLDLR DRVDSLFRFL 701: HKLSSLRTRN LPLREGSLAS ESSFPGEPSG NKGLVYRLIT KVLSKQEIPG LEYHSSTVGR FIKSGFGRFG LGQAKPSLAD QSVILVFVIG GINGIEVLEA 801: QEAVSESGRP DINLVIGGTT LLTPDDMFEL LLGQFSHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)